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1. 重庆医科大学附属口腔医院牙周黏膜科
2. 重庆医科大学附属第一医院口腔颌面外科
纸质出版日期:2010,
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[1]梅杰,杨凯,张国栋,张福军,陈丹,陈睿.金黄地鼠颊癌差异表达基因谱的构建及相关生物信息学分析[J].重庆医科大学学报,2010,35(12):1782-1786.
MEI Jie, et al. The establishment of golden hamster cheek mucosa carcinoma related gene differential expression profile and bioinformatics analysis[J]. Journal of Chongqing Medical University, 2010,35(12):1782-1786.
[1]梅杰,杨凯,张国栋,张福军,陈丹,陈睿.金黄地鼠颊癌差异表达基因谱的构建及相关生物信息学分析[J].重庆医科大学学报,2010,35(12):1782-1786. DOI: 10.13406/j.cnki.cyxb.2010.12.034.
MEI Jie, et al. The establishment of golden hamster cheek mucosa carcinoma related gene differential expression profile and bioinformatics analysis[J]. Journal of Chongqing Medical University, 2010,35(12):1782-1786. DOI: 10.13406/j.cnki.cyxb.2010.12.034.
目的:构建二甲基苯并蒽(9
10-Dimethylen-1
2Benzanthracene
DMBA)诱导金黄地鼠颊囊黏膜癌变过程中基因差异表达谱
用相关生物信息学分析方法筛选在癌变过程中起重要作用的基因和信号通路。方法:用DMBA诱导建立金黄地鼠颊鳞癌模型
以Ratio≥2和Ratio≤0.5为阈值
用Agilent全基因表达谱芯片检测金黄地鼠颊囊黏膜癌变的差异表达基因
并对这些差异基因进行(Gene ontology
GO)功能分类和Pathway通路分析。结果:金黄地鼠正常颊黏膜和癌变组织之间共有1 943条差异表达基因
其中上调基因787条
下调基因1 156条;GO分析差异表达基因涉及结构分子相关基因群、转录调控相关基因群和代谢相关基因群等10类;Pathway分析在颊黏膜癌变中共有27条通路发生显著性异常改变
有136条差异基因在以上27条异常通路上发生富集
其中Ppp3r2、Actn1、Src等13条基因均分别富集在3条以上异常改变的通路上。结论:金黄地鼠颊癌的发生共有1 943条基因发生差异表达和27条通路发生异常改变
其中Ppp3r2、Actn1、Src等13条基因是导致细胞通路改变而最终发生癌变的重要致病基因
针对以上基因和通路的深入研究
将有助于揭示口腔黏膜癌变的分子机制
并为基因治疗提供新的靶点。
Objective:To construct differential gene expression profile in the DMBA(9
10-Dimethylen-1
2Benzanthracene
DMBA) induced hamster cheek pouch mucosa carcinogenesis process
using bioinformatics analysis methods in screening the genes and signaling pathways which play an important role in carcinogenesis.Methods:The DMBA-induced hamster buccal squamous cell carcinoma model was established;screening criteria of Ratio≥2 and Ratio≤0.5 were used;Agilent whole gene expression profiling microarray was used to detect the differentially expressed genes in hamster cheek pouch mucosa carcinogenesis
and then Gene Ontology for biological function and Pathway analysis were performed with those important virulent genes.Results:A total of 1 943 differentially expressed genes between normal hamster buccal mucosa and cancerous tissue were detected
of which 787 up-regulated and 1 156 down-regulated;GO analysis of differentially expressed genes involved structural elements
transcription regulation
metabolism and so on;pathway analysis found that 27 channels had significant changes
involving a total of 136 different genes.Among them
13 genes
including Ppp3r2
Actn1 and Src involved three or more pathways.Conclusion:During the occurrence of the golden hamster cheek cancer
a total of 1 943 genes were differentially expressed and 27 pathways abnormally changed
among which 13 genes including Ppp3r2
Actn1 and Src lead to changes in cellular pathways and eventually become an important cause of cancer.An in-depth study of those important genes will reveal the molecular mechanism of carcinogenesis of oral mucosa and provide an effective method of targeted therapy.
金黄地鼠颊黏膜癌变全基因表达谱生物信息学
Golden hamsterCheek pouch mucosacarcinogenesisEntire gene expression profileBio-informatics
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