Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer
返回论文页
Full-length article|更新时间:2022-06-24
|
Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer
Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer
Genes & Diseases2022年9卷第2期
作者机构:
1. Tianyou Hospital, Affiliated to Wuhan University of Science and Technology,Wuhan,PR China,430064
2. Department of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa,HI,Honolulu,USA,96813
3. Molecular Biosciences and Bioengineering Program, College of Tropical Agriculture and Human Resources, University of Hawaii at Manoa,HI,Honolulu,USA,96822
4. Shanghai Key Laboratory for Molecular Imaging, Shanghai University of Medicine and Health Sciences,Shanghai,PR China,201318
Yi Zuo, Shaoqiu Chen, Lingling Yan, 等. Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer[J]. Genes & Diseases, 2022,9(2).
Yi Zuo, Shaoqiu Chen, Lingling Yan, et al. Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer[J]. Genes & Diseases, 2022,9(2).
Yi Zuo, Shaoqiu Chen, Lingling Yan, 等. Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer[J]. Genes & Diseases, 2022,9(2). DOI: 10.1016/j.gendis.2021.01.006.
Yi Zuo, Shaoqiu Chen, Lingling Yan, et al. Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer[J]. Genes & Diseases, 2022,9(2). DOI: 10.1016/j.gendis.2021.01.006.
Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer
摘要
Abstract
Liver cancer presents divergent clinical behaviors. There remain opportunities for molecular markers to improve liver cancer diagnosis and prognosis
especially since tRNA-derived small RNAs (tsRNA) have rarely been studied. In this study
a random forests (RF) diagnostic model was built based upon tsRNA profiling of paired tumor and adjacent normal samples and validated by independent validation (IV). A LASSO model was used to developed a seven-tsRNA-based risk score signature for liver cancer prognosis. Model performance was evaluated by a receiver operating characteristic curve (ROC curve) and Precision-Recall curve (PR curve). The five-tsRNA-based RF diagnosis model had area under the receiver operating characteristic curve (AUROC) 88% and area under the precision–recall curve (AUPR) 87% in the discovery cohort and 87% and 86% in IV-AUROC and IV-AUPR
respectively. The seven-tsRNA-based prognostic model predicts the overall survival of liver cancer patients (Hazard Ratio 2.02
95% CI 1.36–3.00
P
<
0.001)
independent of standard clinicopathological prognostic factors. Moreover
the model successfully categorizes patients into high-low risk groups. Diagnostic and prognostic modeling can be reliably utilized in the diagnosis of liver cancer and high-low risk classification of patients based upon tsRNA characterization.
关键词
Keywords
DiagnosisLiver cancerPrognosisRandom foreststRNA-derived small RNAs
Deregulated miRNA clusters in ovarian cancer: Imperative implications in personalized medicine
WNT/β-catenin signaling in hepatocellular carcinoma: The aberrant activation, pathogenic roles, and therapeutic opportunities
Is there a potential of circulating miRNAs as biomarkers in rheumatic diseases?
Interplays of liver fibrosis-associated microRNAs: Molecular mechanisms and implications in diagnosis and therapy
Advances of CRISPR-Cas13 system in COVID-19 diagnosis and treatment
相关作者
Shama Prasada Kabekkodu
Raghu Radhakrishnan
Sanjiban Chakrabarty
Padmanaban S. Suresh
Vasudha Devi
Divya Adiga
Amoolya Kandettu
Malgorzata Czyz
相关机构
Department of Oral Pathology, Manipal College of Dental Sciences, Manipal Academy of Higher Education, Manipal, Karnataka
Center for DNA Repair and Genome Stability (CDRGS), Manipal Academy of Higher Education, Manipal, Karnataka
School of Biotechnology, National Institute of Technology, Calicut, Kerala
Department of Pharmacology, Centre for Cardiovascular Pharmacology, Melaka Manipal Medical College, Manipal Academy of Higher Education, Manipal Campus, Manipal, Karnataka
Department of Cell and Molecular Biology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka