Functional experiment plays an important role in basic theory and clinical practice. For training high-quality medical talents in medical colleges， many improvements have been made in the functional experiment teaching and certain effects have been obtained. But a comprehensive evalu-ation system was still needed. Clinical medical students of 2010 grade were taken as the appraisal objects. Assessment content， methods and standards were designed according to the basic requirements of functional experiment. Students were evaluated by ordinary performance， test papers and experiment competition. Practice showed that the system was of significant importance in improving the experi-mental teaching quality and developing students' practical ability and comprehensive quality.