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1. 广州中医药大学第二临床医学院检验医学部,广州,501180
2. 广州医科大学附属广州市妇女儿童医疗中心口腔科,广州,501180
纸质出版日期:2018,
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李有强, 张云燕, 陈茶, 等. 3-O-C12-HSL阻碍Mo-DCs成熟过程中lncRNA表达谱的变化[J]. 重庆医科大学学报, 2018,43(1):117.
Li Youqiang, Zhang Yunyan, Chen Cha, et al. Differential expression profile of long non-coding RNA in 3-O-C12-HSL-inhibted Mo-DCs maturation[J]. Journal of Chongqing Medical University, 2018,43(1):117.
目的:观察铜绿假单胞菌(Pseudomonas aerltginosa,PA)分泌的信号分子N-3-氧代十二烷酰-L-同型丝氨酸内酯(N-3-oxododecanoy1-L-homoserine lactone,3-O-C12-HSL)阻碍单核细胞来源的树突细胞(monocytes derived-dendritic cells,Mo-DCs)成熟过程中长链非编码RNA(long non-coding RNA,lncRNA)表达谱的变化情况。方法:采用免疫磁珠法分选人外周血CD14+单核细胞,经重组人粒-单核细胞集落刺激因子和重组人白细胞介素-4诱导分化为Mo-DCs。不同因素处理Mo-DCs,实验组加入终浓度0.1 μg/mL的LPS和终浓度为40 μmol/L的3-O-C12-HSL,对照组加入相应体积的含0.1%DMSO的PBS,模型组加入终浓度0.1 μg/mL的LPS。利用lncRNA芯片技术检测对照组、模型组和实验组间lncRNA表达谱的差异。对筛选数据进行分析处理,利用散点图分析2倍以上差异lncRNA在各处理因素间的总体变异情况,利用聚类分析研究表达差异5倍以上lncRNA的聚类情况。结果:与对照组和模型组相比较,实验组筛选出2倍以上表达差异的lncRNA为1 386条,其中上调表达的548条,下调表达的838条。筛选出具有5倍以上表达差异的lncRNA共153条,占2倍表达差异lncRNA的11.04%,其中上调表达的22条,下调表达的131条。散点图发现2倍表达差异的lncRNA总体分布呈集中趋势,存在特征性改变。聚类分析发现5倍表达差异的lncRNA能根据处理因素进行有效的分层聚类。结合GO分析和mRNA通路分析,差异lncRNA的相关基因可富集至PPAR信号通路、钙信号通路和NF-κB信号通路中。结论:3-O-C12-HSL作用于Mo-DCs后,lncRNA表达谱发生了特征性变化,表达差异的lncRNA可能参与了3-O-C12-HSL阻碍Mo-DCs成熟过程。
Objective:To analyze the expression profile variation of long non-coding RNA(lncRNA) in 3-O-C12-HSL-inhibted Mo-DCs maturation. Methods:Human CD14+ monocytes were separated by immunomagnetic beads and induced by hIL-4 and hGM-CSF. Experimental group was stimulated with 40 μmol/L 3-O-C12-HSL and 0.1 μg/mL LPS;control group was stimulated with 0.1% DMSO and model group was stimulated with 0.1 μg/mL LPS. lncRNA chip was used to analyze the differential expression among control group,model group and experimental group. Significant differe-ntial lncRNA(P<0.05) was analyzed and scatter plot was used to study the variance in 2 times differential lncRNA. Clustering analysis was used to study the 5 times differential lncRNA. Results:Comparing with those of control group and model group,1 386 lncRNA which have more than 2 times variation and significant differences by statistical analysis were selected out,including 548 up-regulated lncRNA and 838 down-regulated lncRNA. Meatime,153 lncRNA accounting for 11.04% of all differential lncRNA had more than 5 times variation in differ-ence groups. Characteristic change were displayed among 2 times differential lncRNA in scatter plot analysis. The hierarchical clustering results displayed that 5 times lncRNA clustering efficient in different groups. According to GO analysis and mRNA pathway analysis,PPAR signaling pathway,calcium signaling pathway and NF-κB signaling pathway were enriched with differential lncRNA associated genes. Conclusion:lncRNA displaying characteristic change may involve in 3-O-C12-HSL-inhibted Mo-DCs maturation.
N-3-氧代十二烷酰-L-同型丝氨酸内酯单核细胞来源树突细胞长链非编码RNA
long non coding RNAN-3-oxododecanoy1-L-homoserine lactonemonocytes derived-dendritic cells
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