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1.400038 重庆,陆军军医大学(第三军医大学)军事预防医学系:军事环境卫生学教研室
2.400038 重庆,陆军军医大学(第三军医大学)军事预防医学系:毒理学研究所
[ 周紫垣, E-mail: ziyuanzhou@tmmu.edu.cn ZHOU Ziyuan, E-mail: ziyuanzhou@tmmu.edu.cn
收稿:2018-01-25,
修回:2018-03-06,
纸质出版:2018-05-30
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陈维艳, 龙琦, 王灵巧, 等. PC4基因启动子区多态性与结直肠癌发病风险的关联研究[J]. 第三军医大学学报, 2018,40(10):909-917.
Weiyan CHEN, Qi LONG, Lingqiao WANG, et al. Association between polymorphisms of human positive coactivator 4 gene promoter and risk of colorectal cancer[J]. Journal of Third Military Medical University, 2018, 40(10): 909-917.
陈维艳, 龙琦, 王灵巧, 等. PC4基因启动子区多态性与结直肠癌发病风险的关联研究[J]. 第三军医大学学报, 2018,40(10):909-917. DOI: 10.16016/j.1000-5404.201801212.
Weiyan CHEN, Qi LONG, Lingqiao WANG, et al. Association between polymorphisms of human positive coactivator 4 gene promoter and risk of colorectal cancer[J]. Journal of Third Military Medical University, 2018, 40(10): 909-917. DOI: 10.16016/j.1000-5404.201801212.
目的
2
通过对PC4基因启动子区潜在功能性SNP位点与结直肠癌的发病风险的关联分析,探索PC4基因遗传变异作为结直肠癌遗传易感性分子标记的可能性。
方法
2
① 经生物信息学方法筛选PC4基因启动子区SNP位点;②采用探针法和测序法对选定SNP位点进行基因分型后于病例对照研究中作多因素Logistic回归分析。
结果
2
① 筛选出PC4启动子区7个潜在功能性SNP位点;②位点rs116123859 CC+CT基因型(
OR
=4.89,95%
CI
=1.29~18.51,
P
=0.020;OR
adj
=3.31,95%
CI
=0.84~ 13.06,
P
adj
=0.087)和位点rs6891588 AG+GG基因型(
OR
adj
=1.28,95%
CI
=1.00~1.64,
P
adj
=0.048)与结直肠癌的发病风险有关联,但效应微弱;③随个体携带的“风险”倾向基因型的数量增多,结直肠癌风险也有随之增加的趋势(
P
trend
=0.004);④单倍型T_C_C_G_G_A_A、T_G_A_G_G_G_A患结直肠癌的风险是其他单倍型的2倍(
OR
分别为2.67、2.98,95%
CI
分别为1.78~4.02、1.46~6.04,
P
值分别为
<
0.001、0.003)。
结论
2
PC4基因启动区单核苷酸多态性与结直肠癌的风险之间具有显著关联性,提示PC4基因启动子区多态性具有作为结直肠癌遗传易感性分子标记的潜能。
Objective
2
To analyze the association between potential functional single nucleotide polymorphisms (SNPs) in human positive coactivator 4 (PC4) gene promoter and the risk of colorectal cancer and assess the possibility of genetic variation of PC4 gene as a molecular marker of colorectal cancer predisposition.
Methods
2
The potential SNPs in PC4 gene promoter were selected using bioinformatic method
and Sanger sequencing and Taqman RT-PCR were used for genotyping these selected SNPs. Logistic regression analysis was performed to analyze the association between these SNPs and the risk of colorectal cancer in a case-control study involving 488 pathologically confirmed patients with colorectal cancer and 894 age-
gender
and residence-matched concurrent patients with non-malignant diseases.
Results
2
Seven potential SNPs in PC4 gene promoter were selected
among which the SNP sites rs116123859 AG+GG (
OR
=4.89
95%
CI
: 1.29~18.51
P
=0.020;
OR
adj
=3.31
95%
CI
: 0.84~13.06
P
adj
=0.087) and rs6891588 AG+GG (
OR
adj
=1.28
95%
CI
: 1.00~1.64
P
adj
=0.048) were found to be associated with the risk of colorectal cancer
but the effect was weak. The individuals carrying more risk genotypes tended to have increasing risks of colorectal cancer (
P
trend
=0.004). The results of haplotype analysis showed that the haplotypes T_C_C_G_G_A_A (
OR
=2.67
95%
CI
: 1.78~4.02
P
<
0.001) and T_G_A_G_G_G_A (
OR
=2.98
95%
CI
: 1.46~6.04
P
<
0.003) were associated an increased risk of colorectal cancer by 2 folds compared with the other haplotypes.
Conclusion
2
SNPs of PC4 gene promoter are significantly associated with the risk of colorectal cancer and can serve as a potential molecular marker of the susceptibility to colorectal cancer.
TORRE LA, BRAY F, SIEGEL RL, et al . Global cancer statistics, 2012[J ] . CA Cancer J Clin, 2015, 65(2): 87-108. DOI: 10.3322/caac.21262.
KUIPERS E J, GRADY W M, LIEBERMAN D, et al . Colorectal cancer[J ] . Nat Rev Dis Primers, 2015, 1: 15065. DOI: 10.1038/nrdp.2015.65.
赫捷, 陈万青. 2012中国肿瘤登记年报[M].北京:军事医学科学出版社, 2012: 302.
HAO J, CHEN W Q. Chinese annual report of cancer in 2012[M]. Beijing: Military Medical Science Press, 2012: 302.
DRULINER BR, RUAN X, SICOTTE H, et al . Early genetic aberrations in patients with sporadic colorectal can cer[J ] . Mol Carcinog, 2018, 57(1):114-124. DOI: 10.1002/mc.22738.
MORTUSEWICZ O, ROTH W, LI N, et al . Recruitment of RNA polymerase Ⅱ cofactor PC4 to DNA damage sites[J ] . J Cell Biol, 2008, 183(5): 769-776.DOI: 10.1083/jcb.200808097.
DAS C, HIZUME K, BATTA K, et al . Transcriptional coactivator PC4, a chromatin-associated protein, induces chromatin condensation[J ] . Mol Cell Biol, 2006, 26(22): 8303-8315.DOI: 10.1128/MCB.00887-06.
SHI C, ZHU Y, ZHAU HE, et al . PC4, a novel marker for stem cell transformation and cancer progression[J ] .J Biotechnol, 2008, 136(Suppl): S189. DOI: 10.1016/j.jbiotec.2008.07.1822.
PENG Y, YANG J, ZHANG E, et al . Human positive coactivator 4 is a potential novel therapeutic target in non-small cell lung cancer[J ] . Cancer Gene Ther, 2012, 19(10): 690-696. DOI: 10.1038/cgt.2012.52.
LIAO M, ZHANG Y, KANG JH, et al . Coactivator function of positive cofactor 4 (PC4) in Sp1-directed luteinizing hormone receptor (LHR) gene transcription[J ] . J Biol Chem, 2011, 286(9): 7681-7691. DOI: 10.1074/jbc.M110.188532.
WANG X, HUANG L, XU Y, et al . Association between survivin-31G > C promoter polymorphism and cancer risk: a meta-analysis[J ] . Eur J Hum Genet, 2012, 20(7): 790-795. DOI: 10.1038/ejhg.2011.276.
CAMPBELL D B, LI C, SUTCLIFFE J S, et al . Genetic evidence implicating multiple genes in the MET receptor tyrosine kinase pathway in autism spectrum disorder[J ] . Autism Res, 2008, 1(3): 159-168. DOI: 10.1002/aur.27.
BARBER JC, HUANG S, BATEMAN MS, et al . Transmitted deletions of medial 5p and learning difficulties; does the cadherin cluster only become penetrant when flanking genes are deleted?[J ] . Am J Med Genet, 2011, 155(11): 2807-2815. DOI: 10.1002/ajmg.a.34241.
YOKOI S, YASUI K, SAITO-OHARA F, et al . A novel target gene, SKP2, within the 5p13 amplicon that is frequently detected in small cell lung cancers[J ] . Am J Pathol, 2002, 161(1): 207-216. DOI: 10.1016/S0002-9440(10)64172-7.
YANG H, ZHOU Y, ZHOU Z, et al . A novel polymorphism rs1329149 of CYP2E1 and a known polymorphism rs671 of ALDH2 of alcohol metabolizing enzymes are associated with colorectal can cer in a southwestern Chinese population[J ] .Cancer Epidemiol Biomarkers Prev, 2009, 18(9): 2522-2527. DOI: 10.1158/1055-9965.EPI-09-0398.
ZHOU ZY, TAKEZAKI T, MO BQ, et al . Development of a semi-quantitative food frequency questionnaire to determine variation in nutrient intakes between urban and rural areas of Chongqing, China[J ] .Asia Pac J Clin Nutr, 2004, 13(3): 273-283.
ZHANG XH, SHEN M, LIU L, et al . Association analysis of single nucleotide polymorphisms in C1QTNF6, RAC2, and an intergenic region at 14q32.2 with Graves' Disease in Chinese Han population[J ] .Genet Test Mol Biomarkers, 2017, 21(8): 479-484. DOI: 10.1089/gtmb.2017.0009.
NAMIPASHAKI A, RAZAGHI-MOGHADAM Z, ANSARI-POUR N. The essentiality of reporting Hardy-Weinberg equilibrium calculations in population-based genetic association studies[J]. Cell J, 2015, 17(2): 187-192. DOI: 10.22074/cellj.2016.3711.
QIAN D, ZHANG B, ZENG XL, et al . Inhibition of human positive cofactor 4 radiosensitizes human esophageal squmaous cell carcinoma cells by suppressing XLF-mediated nonhomologous end joining[J ] . Cell Death Dis, 2014, 5: e1461.DOI: 10.1038/cddis.2014.416.
HU X, ZHANG C, ZHANG Y, et al . Down regulation of human positive coactivator 4 suppress tumorigenesis and lung metastasis of osteosarcoma[J ] . Oncotarget, 2017, 8: 53210-53225. DOI: 10.18632/oncotarget.18290.
李圣彦, 郎志宏, 黄大昉.真核生物启动子研究概述[J].生物技术进展, 2014, 4(3): 158-164. DOI: 10.3969/j.issn.2095-2341.2014.03.02.
LI S Y, LANG Z H, HUANG D F. Research progress on eukaryotic promoter[J]. Current Biotech, 2014, 4(3): 158-164. DOI:10.3969/j.issn.2095-2341.2014.03.02.
CONESA C, ACKER J.Sub1/PC4 a chromatin associated protein with multiple functions in transcriptionp[J]. RNA Biol, 2010, 7(3): 287-290. DOI: 10.4161/rna.7.3.11491.
HOOKER S, BONILLA C, AKEREYENI F, et al . NAT2 and NER genetic variants and sporadic prostate cancer susceptibility in African Americans[J ] . Prostate Cancer Prostatic Dis, 2008, 11(4): 349-356. DOI: 10.1038/sj.pcan.4501027.
HOWELL W M, JOBS M, GYLLENSTEN U, et al . Dynamic allele-specific hybridization. A newmethod for scoring single nucleotide polymorphisms[J ] . Nat Biotechnol, 1999, 17(1): 87-88. DOI: 10.1038/5270.
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