Zhang Jie,Liu Xi,Gan Dan.Sequencing and bioinformatic analysis of genome of Acinetobacter baumannii bacteriophage AB3[J].J Amry Med Univ (J Third Mil Med Univ),2013,35(15):1562-1565.
Zhang Jie,Liu Xi,Gan Dan.Sequencing and bioinformatic analysis of genome of Acinetobacter baumannii bacteriophage AB3[J].J Amry Med Univ (J Third Mil Med Univ),2013,35(15):1562-1565.DOI:
Objective To sequence the Acinetobacter baumannii bacteriophage AB3 separated by our team
and to perform bioinformatics analysis
so as to identify the classification of its phylogenetic relationship. Methods Shot-gun library and config package strategy were carried out for sequencing the genome of bacteriophage AB3. Such software as EditSeq
tRNAscan-SE
TRF
FindTerm
ORF finder
BPROM and GeneMark
TM
were applied to predict both general characteristics of the bacteriophage AB3 genome and the coding gene function. In addition
the evolution of RNA polymerase gene system was analyzed with the software of Clustalx and phylip. Results The genome of bacteriophage AB3 was a
double-strand DNA with a full length of 31 185 bp
in which G+C mol% was 39.18% and 28 predicted genes
1 transcription terminator
and 4 possible promoter sequences were included. Conclusion Genetic analysis and RNA polymerase gene evolution analysis indicate that bacteriophage AB3 is similar to bacteriophage AB1