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纸质出版:2009
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高天,梁志清,聂艳丽,胡华.基于寡核苷酸芯片的β-地中海贫血DNA甲基化的研究[J].陆军军医大学学报(原第三军医大学学报),2009,31(24):2469-2472.
GAO Tian,LIANG Zhi-qing,NIE Yan-li,HU Hua.DNA methylation in β-thalassemia by oligonucleotide microarray[J].J Amry Med Univ (J Third Mil Med Univ),2009,31(24):2469-2472.
目的 通过寡核苷酸芯片寻找和分析β-地中海贫血DNA甲基化相关的基因位点,进一步探讨产前筛查及诊断β-地中海贫血的新方法。 方法 利用含有人30 178个DNA甲基化探针的寡核苷酸芯片,对2例β地中海贫血患儿脐血与2例正常脐血分别配对检测差异基因DNA甲基化情况,并用甲基化特异PCR(methylationspecific PCR
MSP)和荧光定量PCR(RT-PCR)验证芯片结果。采用非监督聚类(hierarchical clustering)等方法发现统计学意义上差异表达的基因。 结果 两组芯片结果显示,差异基因共209条(ratio≥2.0,ratio≤0.5);其中上调基因共113条,下调基因共96条。验证结果显示,DNA甲基化相关基因成红细胞增多型白血病致病因子(erythroblastic leukemia viral,v-erb-a)与正常血样比较呈高甲基化状态。 结论 利用DNA甲基化芯片及甲基化特异PCR技术检测并验证出成红细胞增多型白血病致病因子(v-erb-a)在地中海贫血中呈高甲基化。
Objective To search and analyze the DNA methylation-related genes of β-thalassemia by oligonucleotide microarray in order to explore a new method for early diagnosis of β-thalassemia. Methods The cord blood samples of 2 children with β-thalassemia and 2 health children were detected by a chip containing human DNA methylation 30 178 oligonucleotide probes. The chip results were verified by the methods of methylation-specific PCR (MSP) and real-time PCR. The statistical significance of differentially expressed genes was found on non-supervised clustering (Hierarchical clustering). Results A total of 209 genetic differences (ratio≥2.0 or≤0.5) were showed by 2 groups of chips
and of them 113 genes were up-regulated and 96 genes were down-regulated. The results showed that the methylation-related gene erythroblastic leukemia viral (v-erb-a) was of hypermethylation compared with the normal blood. Conclusion A large number of differentially expressed genes are screened out by the technology of High-throughput DNA methylation of the gene chip in thalassemia. The DNA methylation-related gene of v-erb-a is of hypermethylation in thalassemia. Our methods offers a new idea and approach for prenatal diagnosis for thalassemia by the DNA methylation-related microarray.
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