
浏览全部资源
扫码关注微信
纸质出版:2008
移动端阅览
张守印,郭学青,李振军,叶长芸,赵爱兰,徐建国.16S rRNA基因克隆文库用于菌群分析的效能研究和评价[J].陆军军医大学学报(原第三军医大学学报),2008,30(16):1549-1552.
ZHANG Shou-yin,GUO Xue-qing,LI Zhen-jun,YE Chang-yun,ZHAO Ai-lan,XU Jian-guo.Evaluation of 16S rRNA gene clone library in analyzing bacterial flora by mixed bacterial suspension[J].J Amry Med Univ (J Third Mil Med Univ),2008,30(16):1549-1552.
张守印,郭学青,李振军,叶长芸,赵爱兰,徐建国.16S rRNA基因克隆文库用于菌群分析的效能研究和评价[J].陆军军医大学学报(原第三军医大学学报),2008,30(16):1549-1552. DOI:
ZHANG Shou-yin,GUO Xue-qing,LI Zhen-jun,YE Chang-yun,ZHAO Ai-lan,XU Jian-guo.Evaluation of 16S rRNA gene clone library in analyzing bacterial flora by mixed bacterial suspension[J].J Amry Med Univ (J Third Mil Med Univ),2008,30(16):1549-1552. DOI:
目的 建立16S rRNA基因克隆文库进行菌群相对定量的方法,评价其对细菌的检测效率以及对混合菌群中低含量细菌的分析能力。 方法 取脆弱类杆菌等9种细菌以相同及级差比例制备细菌悬液,分别用或不用变溶菌素处理后,用试剂盒提取核酸,16S rRNA 基因通用引物进行PCR扩增、纯化、连接、克隆和测序,建立16S rRNA基因克隆文库,将序列与数据库进行比对分析。 结果 相同比例制备的菌悬液,加或不加变溶菌素提取的核酸,掺入的9种细菌均可检出。级差比例制备的菌悬液,加变溶菌素提取核酸,掺入的9种细菌均可检出;不加变溶菌素提取核酸,数量少难裂解的革兰阳性菌双歧杆菌未能检出。混合菌悬液中各种细菌的比例与文库反映的各种细菌的比例有数量对应关系,但不是线性对应关系。 结论 16S rRNA基因序列分析是一种较好的细菌菌群分析方法,它可以同时检出多种细菌,并能对混合细菌标本进行菌群相对定量,反映菌群中各种细菌的丰度,但不能准确定量菌群中各种细菌的数量。
Objective To evaluate the detection efficiency of 16S rRNA gene clone library in relative quantification of bacteria in the flora and its analyzing capacity to low-density bacteria. Methods In order to obtain definite background of experimental specimen
self-mixed bacterial suspensions including 9 kinds of bacteria in equal proportion or at gradient ratios were prepared to replace the conventional clinical bacterial samples. The suspensions were lyzed in presence or absence of mutanolysin
and then genomic DNA was extracted with common method. 16S rRNA gene clone library was established by amplifying targeted 16S rRNA gene conserved regions of the bacteria
purifying PCR products
inserting them to plasmid pGEM-T easy vector
transforming in DH5α
and cloning and sequencing the recombinants. Nucleotide sequences were blasted with GenBank database. Results For the bacterial suspension in equal proportion
all 9 bacteria were detectable when the genomic DNAs were extracted with or without mutanolysin. But for the bacterial suspension mixed at gradient ratios
all 9 bacteria were detectable when mutanolysin was used in lysis
and bifidobacterium at small amount was undetectable when DNA extraction was lyzed without mutanolysin. The bacterial ratios indicated by the library had certain correspondence to that in the mixed bacterial suspension
but not in a linear relationship. Conclusion The 16S rRNA gene sequences technology is a good method to analyze bacterial flora
capable of multiple bacterial dectection
and can relatively quantify the bacteria in the flora. It can indicate the abundance of the bacteria
but not their exact amounts.
0
浏览量
0
下载量
0
CSCD
关联资源
相关文章
相关作者
相关机构
京公网安备11010802024621