Xinli YE, Jing LI, Bin TANG, et al. Differential expression of MUC1 gene mediated by Fusobacterium nucleatum in colorectal cancer cells[J]. Journal of Third Military Medical University, 2021, 43(15): 1501-1507.
DOI:
Xinli YE, Jing LI, Bin TANG, et al. Differential expression of MUC1 gene mediated by Fusobacterium nucleatum in colorectal cancer cells[J]. Journal of Third Military Medical University, 2021, 43(15): 1501-1507. DOI: 10.16016/j.1000-5404.202101166.
Differential expression of MUC1 gene mediated by Fusobacterium nucleatum in colorectal cancer cells
) on differential expression genes (DEGs) in colorectal cancer (CRC) by bioinformatics analysis
and to identify the expression of key genes in
F.nucleatum
infected CRC cells.
Methods
2
The high-throughput sequencing data of DEGs in CRC regulated by
F.nucleatum
were downloaded and screened from Gene Expression Omnibus (GEO) database
then Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed on the datasets. Protein-protein interaction (PPI) network of DEGs were subsequently constructed with Cytoscape software. Finally
Western blotting and RT-qPCR were employed to verity the expression of hub gene MUC1 at protein and mRNA levels in the cell model
respectively.
Results
2
A total of 118 DEGs were screened out
of which 20 were up-regulated and 98 down-regulated. GO analysis showed that DEGs were noticeably enriched in cellular component (CC) such as plasma membrane and integral component of membrane
and KEGG analysis found that DEGs were significantly enriched in PI3K-Akt
MAPK
Rap1 and JAK-STAT signaling pathways (
P
<
0.05). In the PPI network
the hub gene MUC1 presented a high centrality score. Western blotting and RT-qPCR indicated that the infection of
F.nucleatum
was significantly correlated with the differential expression of MUC1.
Conclusion
2
The mechanism of CRC induced by
F.nucleatum
infection may be related to the overexpression of MUC1
according to the screening and verification of hub genes.
关键词
Keywords
references
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