Liewang Qiu, Ke Zhan, Kija Malale, et al. Transcriptomic profiling of peroxisome-related genes reveals a novel prognostic signature in hepatocellular carcinoma. [J]. Genes & Diseases 9(1).(2022)
DOI:
Liewang Qiu, Ke Zhan, Kija Malale, et al. Transcriptomic profiling of peroxisome-related genes reveals a novel prognostic signature in hepatocellular carcinoma. [J]. Genes & Diseases 9(1).(2022) DOI: 10.1016/j.gendis.2020.04.010.
Transcriptomic profiling of peroxisome-related genes reveals a novel prognostic signature in hepatocellular carcinoma
摘要
Abstract
Emerging evidence suggests that peroxisomes play a role in the regulation of tumorigenesis and cancer progression. However
the prognostic value of peroxisome-related genes has been rarely investigated. This study aimed to establish a peroxisome-related gene signature for overall survival (OS) prediction in patients with hepatocellular carcinoma (HCC). First
univariate Cox regression analysis was employed to identify prognostic peroxisome-related genes in The Cancer Genome Atlas liver cancer cohort
and least absolute shrinkage and selection operator Cox regression analysis was used to construct a 10-gene signature. The risk score based on the signature was positively correlated with poor prognosis (HR = 4.501
95% CI = 3.021–6.705
P
= 1.39e−13). Second
multivariate Cox regression incorporating additional characteristics revealed that the signature was an independent predictor. Time-dependent ROC curves demonstrated good performance of the signature in predicting the OS of HCC patients. The prognostic performance was validated using International Cancer Genome Consortium HCC cohort data. Gene set enrichment analysis revealed that the signature-related alterations in biological processes mainly involved peroxisomal functions. Finally
we developed a nomogram model based on the gene signature and TNM stage
which showed a superior prognostic power (C-index = 0.702). Thus
our study revealed a novel peroxisome-related gene signature that may help improve personalized OS prediction in HCC patients.
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