Cloning and sequence analysis of mtDNA cytochrome c oxidase subunitⅠ gene of the Asian Black Bear Sichuan Subspecies
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Cloning and sequence analysis of mtDNA cytochrome c oxidase subunitⅠ gene of the Asian Black Bear Sichuan Subspecies
Journal of Army Medical UniversityVol. 29, Issue 3, Pages: 196-198(2007)
作者机构:
西华师范大学生命科学学院遗传学实验室
作者简介:
基金信息:
DOI:
CLC:Q343.35;Q785;Q959.838
Published:2007,
Published Online:15 February 2007,
稿件说明:
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WU XIA, HOU WAN-RU, CHEN YU, et al. Cloning and sequence analysis of mtDNA cytochrome c oxidase subunitⅠ gene of the Asian Black Bear Sichuan Subspecies. [J]. Journal of army medical university, 2007, 29(3): 196-198.
DOI:
WU XIA, HOU WAN-RU, CHEN YU, et al. Cloning and sequence analysis of mtDNA cytochrome c oxidase subunitⅠ gene of the Asian Black Bear Sichuan Subspecies. [J]. Journal of army medical university, 2007, 29(3): 196-198.DOI:
Cloning and sequence analysis of mtDNA cytochrome c oxidase subunitⅠ gene of the Asian Black Bear Sichuan Subspecies
Objective To explore the features of the cytochrome c oxidase subunit Ⅰ (COXⅠ) of Asian black bear Sichuan subspecies. Methods Primers were designed according published gene sequences of other bear species. A DNA sequence was amplified by PCR from the bear Sichuan subspecies’s hair-follicle tissue total DNA
then the PCR product was sequenced. The results were analyzed and a forecast analysis was carried on. Results The amplified COXⅠ gene of Sichuan black bear was 1 605 bp and contained a 1545-nucleotide open readin
g frame encoding 514 amino acid residues. The overall base composition of COXⅠ gene is 26.9 %
23.1%
18.3 %
and 31.8 % respectively to A
C
G
and T. The start codon of the COXⅠ is ATG
while the termination codon TAA. The protein’s pI is 6.29 and weight is 57.2×10
3
. The similarity analysis and phylogenetic tree analysis indicated that Sichuan black bear has closer relationship to American black bear
but not to brown bear and polar bear. Among dogs
caws and rats
it is closer to the former one. Conclusion There are high similarities in the DNA sequence
protein amino acid sequence of Asian black bear Sichuan subspecies with other bear species
indicating a high conservativity of COXⅠ in these involved species.