Expression profile and mutant analysis of GPC5 gene in lung adenocarcinoma
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Expression profile and mutant analysis of GPC5 gene in lung adenocarcinoma
Journal of Army Medical UniversityVol. 36, Issue 11, Pages: 1153-1157(2014)
作者机构:
1. 第三军医大学军事预防医学院军队流行病学教研室
2. 第三军医大学新桥医院:胸外科,全军呼吸内科研究所,全军呼吸病研究重点实验室
作者简介:
基金信息:
DOI:
CLC:R181.23;R394.3;R734.2
Published:2014,
Published Online:15 June 2014,
稿件说明:
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RAO WEN, YU ZUBIN, XIANG YING, et al. Expression profile and mutant analysis of GPC5 gene in lung adenocarcinoma. [J]. Journal of army medical university, 2014, 36(11): 1153-1157.
DOI:
RAO WEN, YU ZUBIN, XIANG YING, et al. Expression profile and mutant analysis of GPC5 gene in lung adenocarcinoma. [J]. Journal of army medical university, 2014, 36(11): 1153-1157.DOI:
Expression profile and mutant analysis of GPC5 gene in lung adenocarcinoma
Objective To investigate the expression profiles of GPC5 gene in lung adenocarcinoma tumor tissue and corresponding normal tissue
and analyze its mutation. Methods The expression differences of GPC5 in tumor tissue and normal tissue of the 2 datasets downloaded from gene expression omnibus (GEO) were analyzed. The somatic mutations and copy number variation (CNV) of GPC5 gene was analyzed through the cancer genome atlas (TCGA). Real-time quantitative PCR was used to detect the expression of GPC5 gene in tumor tissue and matched normal tissue from 39
lung cancer patients for further verification. Results The expression level of GPC5 was significantly lower in the tumor tissue than in the matched normal tissue by analyzing 2 datasets from GEO (
P
<
0.05). The results of real-time quantitative PCR confirmed that the expression of GPC5 was significantly lower in the tumor tissue than in the matched normal tissue (
P
<
0.01)
and the expression was significantly lower in tumor tissue of TNM stage Ⅱ to Ⅲa than the tumor at TNM stage Ⅰ (
P
<
0.05). Conclusion CNV of GPC5 gene is common in lung adenocarcinoma tissue. Heterozygosity loss may be the cause of reduced expression level of GPC5.