Bioinformatics analysis of envelope gene recombination of Chinese dengue virus isolates
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Bioinformatics analysis of envelope gene recombination of Chinese dengue virus isolates
Journal of Chongqing Medical UniversityVol. 37, Issue 1, Pages: 67-70(2012)
作者机构:
重庆医科大学基础医学院病原生物学教研室,重庆,400016
作者简介:
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Published:2012,
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TU Zeng, LIU Licheng, BAI Zhijun, et al. Bioinformatics analysis of envelope gene recombination of Chinese dengue virus isolates. [J]. Journal of Chongqing Medical University 37(1):67-70(2012)
DOI:
TU Zeng, LIU Licheng, BAI Zhijun, et al. Bioinformatics analysis of envelope gene recombination of Chinese dengue virus isolates. [J]. Journal of Chongqing Medical University 37(1):67-70(2012)DOI:
Bioinformatics analysis of envelope gene recombination of Chinese dengue virus isolates
Objective:To explore the recombination of envelope protein (E) gene of Chinese dengue virus (DV) isolates. Methods:70 Chinese DV E gene sequences available from GenBank were collected,and aligned with Clustal-W,then were incorporated into recombination detection program (RDP3) for potential recombination event detection. Phylogenetic trees constructed by Mega4 were further generated to confirm the recombination events. Results:Three intra-serotype recombination events,four recombinants isolated in 1995,1997,1999,and 2004,respectively,were confirmed in DV-1 E gene data. However,no recombination event was detected in other three serotypes in the data,so was the inter-serotype recombination. Conclusion:Recombination of E gene regions of Chinese dengue virus type 1 exists,although limited data were available.It highlights the necessity of employing more gene regions and se-quences in the analysis to fully detect the recombination in China.
关键词
RDP3登革热E基因遗传重组
Keywords
RDP3dengue feverenvelope protein genegenetic recombination