OBJECTIVE: To establish HPLC fingerprint of Paeonia suffruticosa, and to conduct cluster analysis. METHODS: HPLC-MS was adopted. The determination was performed on Ecosil C18 column with mobile phase consisted of 0.2% formic acid solution-acetonitrile (gradient elution) at the flow rate of 1.0 mL/min. The column temperature was 25 ℃. The sample size was 10 μL. With the reference of paeonol, HPLC chromatograms of 69 batches of samples (S1-S69) were determined. The similarity evaluation was conducted by Similarity Evaluation System for Chromatographic Fingerprint of TCM (2004 A edition). The common peaks were further identified. Corresponding compenents of commen peaks were identified by HPLC-MS [same HPLC condition as above; MS condition included ESI, positive and negative ion model, mass scanning range of m/z 100-1 200, dry gas of N2 (99.999 9%), dry gas velocity of 15 L/ min, dry gas temperature of 350 ℃, collision energy of 4 V, and the collision energy of 10-40 V]. Cluster analysis was carried out by using SPSS 20.0 statistical software. RESULTS: There were 29 common peaks in HPLC chromatograms of 69 batches of samples, and the similarity was more than 0.900 cexcept for 6 batches of samples; the corresponding components of 24 peaks were identified totally by using HPLC method. 69 batches of samples were divided into 5 categories. S19, S22, S26, S29, S30, S33, S34, S38, S43, S46, S49-S51, S53, S56, S57, S64, S65 could be grouped into category Ⅰ; S4-S6, S41 could be grouped into category Ⅱ; S1-S3, S7-S10, S12, S24, S25, S54, S59 could be grouped into category Ⅲ; S15, S23, S35-S37, S39, S40, S47, S48, S52, S58, S66, S67, S69 could be grouped into category Ⅳ; S11, S13,S14, S16-S18, S20, S21, S27, S28, S31, S32, S42, S44, S45, S55, S60-S63, S68 could be grouped into category Ⅴ. CONCLUSIONS: The established HPLC fingerprint, component identification and cluster analysis can provide reference for identification and quality evaluation of P. suffruticosa.