ZHANG Shou-yin,GUO Xue-qing,LI Zhen-jun,YE Chang-yun,ZHAO Ai-lan,XU Jian-guo.Evaluation of 16S rRNA gene clone library in analyzing bacterial flora by mixed bacterial suspension[J].J Amry Med Univ (J Third Mil Med Univ),2008,30(16):1549-1552.
ZHANG Shou-yin,GUO Xue-qing,LI Zhen-jun,YE Chang-yun,ZHAO Ai-lan,XU Jian-guo.Evaluation of 16S rRNA gene clone library in analyzing bacterial flora by mixed bacterial suspension[J].J Amry Med Univ (J Third Mil Med Univ),2008,30(16):1549-1552.DOI:
Evaluation of 16S rRNA gene clone library in analyzing bacterial flora by mixed bacterial suspension
Objective To evaluate the detection efficiency of 16S rRNA gene clone library in relative quantification of bacteria in the flora and its analyzing capacity to low-density bacteria. Methods In order to obtain definite background of experimental specimen
self-mixed bacterial suspensions including 9 kinds of bacteria in equal proportion or at gradient ratios were prepared to replace the conventional clinical bacterial samples. The suspensions were lyzed in presence or absence of mutanolysin
and then genomic DNA was extracted with common method. 16S rRNA gene clone library was established by amplifying targeted 16S rRNA gene conserved regions of the bacteria
purifying PCR products
inserting them to plasmid pGEM-T easy vector
transforming in DH5α
and cloning and sequencing the recombinants. Nucleotide sequences were blasted with GenBank database. Results For the bacterial suspension in equal proportion
all 9 bacteria were detectable when the genomic DNAs were extracted with or without mutanolysin. But for the bacterial suspension mixed at gradient ratios
all 9 bacteria were detectable when mutanolysin was used in lysis
and bifidobacterium at small amount was undetectable when DNA extraction was lyzed without mutanolysin. The bacterial ratios indicated by the library had certain correspondence to that in the mixed bacterial suspension
but not in a linear relationship. Conclusion The 16S rRNA gene sequences technology is a good method to analyze bacterial flora
capable of multiple bacterial dectection
and can relatively quantify the bacteria in the flora. It can indicate the abundance of the bacteria