Yu,HOU Wan-ru,WU Xia,PENG Zheng-song,ZHOU Cai-quan.Sequence analysis of mtDNA NADH-ubiquinone oxidoreductase chain 4 gene of Asian black bear Sichuan subspecies[J].J Amry Med Univ (J Third Mil Med Univ),2007,29(04):318-320.
Yu,HOU Wan-ru,WU Xia,PENG Zheng-song,ZHOU Cai-quan.Sequence analysis of mtDNA NADH-ubiquinone oxidoreductase chain 4 gene of Asian black bear Sichuan subspecies[J].J Amry Med Univ (J Third Mil Med Univ),2007,29(04):318-320.DOI:
Sequence analysis of mtDNA NADH-ubiquinone oxidoreductase chain 4 gene of Asian black bear Sichuan subspecies
Objective To investigate the sequence characteristic of black bear’s mitochondrial NADH-ubiquinone oxidoreductase chain 4 gene(ND4). Methods Primers were designed according to certain species’ NADH-ubiquinone oxidoreductase ND4 in which the DNA sequence had been reported. The DNA sequence was amplified by PCR from the Asian black bear Sichuan subspecies’s (Ursus thibetanus mupinensis) hair-follicle tissue total DNA and were analyzed with its amino acid sequence. Results The ND4 gene sequence length was 1 402 bp and contained a 1 377-nucleotide open reading frame encoding 459 amino acid residues.
The amino acid sequence’s pI was 9.37 and weight was 51.5×10
3
.The DNA sequence and corresponding amino acid sequence of black bear’s ND4 gene had the high similarity with those of other mammalian animals’ ND4 gene
and the similarity was 89% to 91% and 94% to 95%. The result of phylogenetic tree was basically consistent with the traditional species system phylogenetic relations. Topology prediction showed the Asian black bear Sichuan subspecies’s ND4 proteins contained N-glycosylation site
kinase C phosphorylation sites
casein kinase Ⅱ phosphorylation site
N-myristoylation site and leucine-rich region. In addition
black bear’s ND4 protein contained leucine zipper pattern and Leucine-rich region. Conclusion The mammalia animal’s ND4 gene has the high conservative nature. The pretein coded by ND4 gene has high uniformity in the function.
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